======== Glossary ======== .. table:: +----------------+-----------------------------------------------------------------------+ | term | meaning | +================+=======================================================================+ | ``libyodaLib`` | C++ engine library in this repository | +----------------+-----------------------------------------------------------------------+ | ``seams`` | Argum CLI in this repository | +----------------+-----------------------------------------------------------------------+ | ``yoda`` | Compiled Python module in PydSEAMSlib (``_core`` / ``cyoda`` aliases) | +----------------+-----------------------------------------------------------------------+ | ``dseams`` | Lua table from ``require("dseams")`` in yodaStruct | +----------------+-----------------------------------------------------------------------+ | CHILL+ | Four-neighbour staggered/eclipsed star classifier | +----------------+-----------------------------------------------------------------------+ | CHILL | Original four-neighbour rule (``seams chill``) | +----------------+-----------------------------------------------------------------------+ | HC | Hexagonal cage (ice Ih, 12 waters) | +----------------+-----------------------------------------------------------------------+ | DDC | Double-diamond cage (ice Ic, 14 waters) | +----------------+-----------------------------------------------------------------------+ | ice score | Per-atom HC / DDC membership (``seams cages``) | +----------------+-----------------------------------------------------------------------+ | ``seeded`` | Mutual four-nearest seeds, union completions | +----------------+-----------------------------------------------------------------------+ | ``nop`` | Number of particles in the analysed cloud | +----------------+-----------------------------------------------------------------------+ | TUM | Topological unit matching | +----------------+-----------------------------------------------------------------------+ | ``PointCloud`` | Positions, types, box, and per-atom labels | +----------------+-----------------------------------------------------------------------+