=========
Reference
=========


Lookup pages for the engine. Tutorials and how-tos live elsewhere.

.. table::

    +------------------------------------+-----------------------------------------------+
    | page                               | what it names                                 |
    +====================================+===============================================+
    | `seams CLI <cli.rst>`_             | ``seams`` subcommands, flags, colors          |
    +------------------------------------+-----------------------------------------------+
    | `data formats <data-formats.rst>`_ | LAMMPS dump, XYZ, chemfiles, ``.con``         |
    +------------------------------------+-----------------------------------------------+
    | `API map <api.rst>`_               | fronts and headers; the tree is ``api/index`` |
    +------------------------------------+-----------------------------------------------+
    | `API Reference <../api/index>`_    | Doxygen comments, via doxyrest                |
    +------------------------------------+-----------------------------------------------+
    | `Nix flake <nix.rst>`_             | ``nix build``, ``nix develop``, flake outputs |
    +------------------------------------+-----------------------------------------------+
    | `glossary <glossary.rst>`_         | Engine terms                                  |
    +------------------------------------+-----------------------------------------------+

.. toctree::
   :maxdepth: 1

   cli
   data-formats
   api
   ../api/index
   nix
   glossary