Clump

Namespaces
namespace	clump
	Clustering functions. This namespace contains functions that are used in the for clustering ice-like particles.

Classes
struct	clump::Domain

Functions
Domain	clump::largestDomain (const molSys::PointCloud< molSys::Point< double >, double > &cloud, const std::vector< std::vector< int > > &nList, const std::vector< bool > &mask)
int	clump::largestIceCluster (std::string path, molSys::PointCloud< molSys::Point< double >, double > &yCloud, molSys::PointCloud< molSys::Point< double >, double > &iceCloud, const std::vector< std::vector< int > > &nList, std::vector< bool > &isIce, std::vector< int > &clusterID, std::vector< int > &nClusters, std::unordered_map< int, int > &indexNumber, int firstFrame)
	Finds the largest ice cluster.
int	clump::singleClusterLinkedList (molSys::PointCloud< molSys::Point< double >, double > &iceCloud, const std::vector< std::vector< int > > &nList, std::vector< int > &linkedList)
int	clump::clusterAnalysis (std::string path, molSys::PointCloud< molSys::Point< double >, double > &iceCloud, molSys::PointCloud< molSys::Point< double >, double > &yCloud, const std::vector< std::vector< int > > &nList, std::vector< std::vector< int > > &iceNeighbourList, double cutoff, int firstFrame, std::string bopAnalysis="q6")
int	clump::recenterClusterCloud (molSys::PointCloud< molSys::Point< double >, double > &iceCloud, const std::vector< std::vector< int > > &nList)
	Recenters the coordinates of a pointCloud.

Variables
int	clump::Domain::largest = 0
int	clump::Domain::subset = 0
double	clump::Domain::percolation = 0.0

Detailed Description

Function Documentation

clusterAnalysis()

int clump::clusterAnalysis ( std::string path, molSys::PointCloud< molSys::Point< double >, double > & iceCloud, molSys::PointCloud< molSys::Point< double >, double > & yCloud, const std::vector< std::vector< int > > & nList, std::vector< std::vector< int > > & iceNeighbourList, double cutoff, int firstFrame, std::string bopAnalysis = "q6" )

nodiscard

Does the cluster analysis of ice particles in the system. Returns a pointCloud of the largest ice cluster. The neighbour list returned is BY INDEX of the largest ice cluster pointCloud.

largestDomain()

Domain clump::largestDomain ( const molSys::PointCloud< molSys::Point< double >, double > & cloud, const std::vector< std::vector< int > > & nList, const std::vector< bool > & mask )

nodiscard

largestIceCluster()

int clump::largestIceCluster ( std::string path, molSys::PointCloud< molSys::Point< double >, double > & yCloud, molSys::PointCloud< molSys::Point< double >, double > & iceCloud, const std::vector< std::vector< int > > & nList, std::vector< bool > & isIce, std::vector< int > & clusterID, std::vector< int > & nClusters, std::unordered_map< int, int > & indexNumber, int firstFrame )

nodiscard

Finds the largest ice cluster.

recenterClusterCloud()

int clump::recenterClusterCloud ( molSys::PointCloud< molSys::Point< double >, double > & iceCloud, const std::vector< std::vector< int > > & nList )

nodiscard

Recenters the coordinates of a pointCloud.

singleClusterLinkedList()

int clump::singleClusterLinkedList ( molSys::PointCloud< molSys::Point< double >, double > & iceCloud, const std::vector< std::vector< int > > & nList, std::vector< int > & linkedList )

nodiscard

Get the linked list of a cluster, given by iceCloud, for a single cluster. Required for cluster re-centering

Variable Documentation

largest

int clump::Domain::largest = 0

Definition at line 65 of file cluster.hpp.

percolation

double clump::Domain::percolation = 0.0

Definition at line 67 of file cluster.hpp.

subset

int clump::Domain::subset = 0

Definition at line 66 of file cluster.hpp.