d-SEAMS d-SEAMS d-SEAMS
    • d-SEAMS engine libyodaLib and the seams CLI
    • pydseams Python Frame API on yoda
    • dseams (Lua) require("dseams") and Fennel
    • linkcell Periodic linked-cell k-nearest neighbours
/

Getting Started

  • Quickstart

Tutorials

  • Tutorials
  • Classify ice on the mixed TIP4P example

How-to

  • How-to
    • Install the engine
    • Classify a dump
    • ASE integration
    • View a classified frame
    • Confined ice
    • FAQ
    • Troubleshooting
  • Install the engine
  • Classify a dump
  • ASE integration
  • View a classified frame
  • Confined ice
  • FAQ
  • Troubleshooting

Explanation

  • Explanation
  • Repositories
  • CHILL+ versus cages
  • Citation

Reference

  • Reference
  • seams CLI
  • Data Formats
  • Nix flake
  • API map
  • API Reference
  • Glossary
  • Changelog

Development

  • Contributing
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How-toΒΆ

A how-to solves a goal you already have. It is not a learning path.

guide

goal

Install the engine

Get a seams binary

Classify a dump

Run read / chill-plus / cages on a file you have

ASE

Pointer to the pydseams ASE howto

View a classified frame

solvis via pydseams, not OVITO

Confined ice

Nanotube and monolayer classification

FAQ

Short answers

Troubleshooting

Symptom, cause, fix

  • Install the engine
  • Classify a dump
  • ASE integration
  • View a classified frame
  • Confined ice
  • FAQ
  • Troubleshooting
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Classify ice on the mixed TIP4P example
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Install the engine

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