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| Eigen::MatrixXd | pntToPnt::getPointSetRefRing (int n, int axialDim) |
| Eigen::MatrixXd | pntToPnt::createPrismBlock (const molSys::PointCloud< molSys::Point< double >, double > &yCloud, const Eigen::MatrixXd &refPoints, int ringSize, const std::vector< int > &basal1, const std::vector< int > &basal2) |
| double | pntToPnt::getRadiusFromRings (const molSys::PointCloud< molSys::Point< double >, double > &yCloud, const std::vector< int > &basal1, const std::vector< int > &basal2) |
| double | pntToPnt::getAvgHeightPrismBlock (const molSys::PointCloud< molSys::Point< double >, double > &yCloud, const std::vector< int > &basal1, const std::vector< int > &basal2) |
| int | pntToPnt::relOrderPrismBlock (const molSys::PointCloud< molSys::Point< double >, double > &yCloud, const std::vector< int > &basal1, const std::vector< int > &basal2, const std::vector< std::vector< int > > &nList, std::vector< int > &outBasal1, std::vector< int > &outBasal2) |
| int | pntToPnt::relOrderPrismBlock (const molSys::PointCloud< molSys::Point< double >, double > &yCloud, const std::vector< int > &basal1, const std::vector< int > &basal2, std::vector< int > &outBasal1, std::vector< int > &outBasal2) |
| Eigen::MatrixXd | pntToPnt::fillPointSetPrismRing (const molSys::PointCloud< molSys::Point< double >, double > &yCloud, const std::vector< int > &basalRing, int startingIndex) |
| Eigen::MatrixXd | pntToPnt::fillPointSetPrismBlock (const molSys::PointCloud< molSys::Point< double >, double > &yCloud, const std::vector< int > &basal1, const std::vector< int > &basal2, int startingIndex) |
| Eigen::MatrixXd | pntToPnt::getPointSetCage (ring::strucType type) |
| int | pntToPnt::relOrderHC (const molSys::PointCloud< molSys::Point< double >, double > &yCloud, const std::vector< int > &basal1, const std::vector< int > &basal2, const std::vector< std::vector< int > > &nList, std::vector< int > &matchedBasal1, std::vector< int > &matchedBasal2) |
| | Matches the order of the basal rings of an HC or a potential HC.
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| std::vector< int > | pntToPnt::relOrderDDC (int index, const std::vector< std::vector< int > > &rings, const std::vector< cage::Cage > &cageList) |
| | Matches the order of the basal rings of an DDC or a potential HC.
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| std::vector< int > | pntToPnt::relOrderDDC (const std::vector< int > &equatorial, int index, const std::vector< std::vector< int > > &rings, const std::vector< cage::Cage > &cageList) |
| Eigen::MatrixXd | pntToPnt::changeHexCageOrder (const molSys::PointCloud< molSys::Point< double >, double > &yCloud, const std::vector< int > &basal1, const std::vector< int > &basal2, int startingIndex=0) |
| Eigen::MatrixXd | pntToPnt::changeDiaCageOrder (const molSys::PointCloud< molSys::Point< double >, double > &yCloud, const std::vector< int > &ddcOrder, int startingIndex=0) |