internal Directory Reference

Files
	absOrientation.hpp
	bond.hpp
	File for bond-related analyses (hydrogen bonds, bonded atoms for data file write-outs etc.).
	bop.hpp
	File for the bond order parameter analysis.
	bulkTUM.hpp
	File containing functions used specific to bulk topological unit matching (TUM) criterion.
	cage.hpp
	File for cage types for topological network criteria.
	cage_affiliation.hpp
	Order-free per-ring cage classification with an exact incremental update.
	cage_canon.hpp
	cluster.hpp
	File for the bond order parameter analysis.
	density.hpp
	Type- or kind-resolved Cartesian number-density histogram.
	franzblau.hpp
	File for generating shortest-path rings according to the Franzblau algorithm.
	generic.hpp
	File for containing generic or common functions.
	gpu_batch.hpp
	Run the analysis of a resident frame batch on the device.
	gpu_residency.hpp
	Decide whether N frames of the analysis working set fit on the GPU.
	ira_sofi.hpp
	mol_sys.hpp
	The main molecular system handler.
	neighbours.hpp
	Header file for neighbour list generation.
	order_parameter.hpp
	pntCorrespondence.hpp
	rdf.hpp
	Partial 3D radial distribution functions under the dump MIC.
	rdf2d.hpp
	File containing functions used to calculate the in-plane radial distribution functions.
	ring.hpp
	File containing common functions used by bulk and confined topological network critera.
	seams_config.hpp
	Twelve-factor runtime knobs for the engine and the fronts.
	seams_input.hpp
	File for functions that read in files).
	seams_output.hpp
	selection.hpp
	File containing functions used to define 'selections' in a given range, using ring information.
	shapeMatch.hpp
	simd_distance.hpp
	site.hpp
	Per-atom site chemistry, separate from CHILL ice labels.
	sphericart_ylm.hpp
	steinhardt_device.hpp
	structure_desc.hpp
	Voronoi-weighted order, IRA template overlay, SOAP, and a linear prototype classifier.
	topo_bulk.hpp
	File containing functions used specific to bulk topological network critera.
	topo_one_dim.hpp
	File containing functions used specific to quasi-one-dimensional topological network critera (the prism identification scheme).
	topo_two_dim.hpp
	voronoi_qlm.hpp
	Voronoi facet-area weighted bond order parameters.