cluster.hpp File Reference

File for the bond order parameter analysis. More...

#include <array>
#include <boost/geometry.hpp>
#include <boost/math/special_functions/spherical_harmonic.hpp>
#include <bop.hpp>
#include <cmath>
#include <complex>
#include <generic.hpp>
#include <iostream>
#include <math.h>
#include <mol_sys.hpp>
#include <neighbours.hpp>
#include <seams_output.hpp>

Include dependency graph for cluster.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Namespaces
	clump
	Clustering functions. This namespace contains functions that are used in the for clustering ice-like particles.

Functions
int	clump::largestIceCluster (std::string path, molSys::PointCloud< molSys::Point< double >, double > *yCloud, molSys::PointCloud< molSys::Point< double >, double > *iceCloud, std::vector< std::vector< int >> nList, std::vector< bool > *isIce, std::vector< int > *clusterID, std::vector< int > *nClusters, std::unordered_map< int, int > *indexNumber, int firstFrame)
	Finds the largest ice cluster. More...
int	clump::singleClusterLinkedList (molSys::PointCloud< molSys::Point< double >, double > *iceCloud, std::vector< std::vector< int >> nList, std::vector< int > *linkedList)
int	clump::clusterAnalysis (std::string path, molSys::PointCloud< molSys::Point< double >, double > *iceCloud, molSys::PointCloud< molSys::Point< double >, double > *yCloud, std::vector< std::vector< int >> nList, std::vector< std::vector< int >> &iceNeighbourList, double cutoff, int firstFrame, std::string bopAnalysis="q6")
int	clump::recenterClusterCloud (molSys::PointCloud< molSys::Point< double >, double > *iceCloud, std::vector< std::vector< int >> nList)
	Recenters the coordinates of a pointCloud. More...

Detailed Description

File for the bond order parameter analysis.

Definition in file cluster.hpp.