internal Directory Reference

Directory dependency graph for internal:

Files
	absOrientation.hpp
	bond.hpp
	File for bond-related analyses (hydrogen bonds, bonded atoms for data file write-outs etc.).
	bop.hpp
	File for the bond order parameter analysis.
	bulkTUM.hpp
	File containing functions used specific to bulk topological unit matching (TUM) criterion.
	cage.hpp
	File for cage types for topological network criteria.
	cluster.hpp
	File for the bond order parameter analysis.
	franzblau.hpp
	File for generating shortest-path rings according to the Franzblau algorithm.
	generic.hpp
	File for containing generic or common functions.
	mol_sys.hpp
	The main molecular system handler.
	neighbours.hpp
	Header file for neighbour list generation.
	opt_parser.h
	order_parameter.hpp
	pntCorrespondence.hpp
	rdf2d.hpp
	File containing functions used to calculate the in-plane radial distribution functions.
	ring.hpp
	File containing common functions used by bulk and confined topological network critera.
	seams_input.hpp
	File for functions that read in files).
	seams_output.hpp
	selection.hpp
	File containing functions used to define 'selections' in a given range, using ring information.
	shapeMatch.hpp
	topo_bulk.hpp
	File containing functions used specific to bulk topological network critera.
	topo_one_dim.hpp
	File containing functions used specific to quasi-one-dimensional topological network critera (the prism identification scheme).
	topo_two_dim.hpp