#include <algorithm>
#include <array>
#include <fstream>
#include <iostream>
#include <iterator>
#include <math.h>
#include <memory>
#include <sstream>
#include <string>
#include <sys/stat.h>
#include <vector>
#include <Eigen/Core>
#include <cage.hpp>
#include <mol_sys.hpp>
#include <seams_input.hpp>
#include <seams_output.hpp>

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Namespaces
	pntToPnt

Functions
Eigen::MatrixXd	pntToPnt::getPointSetRefRing (int n, int axialDim)

Eigen::MatrixXd	pntToPnt::createPrismBlock (molSys::PointCloud< molSys::Point< double >, double > *yCloud, const Eigen::MatrixXd &refPoints, int ringSize, std::vector< int > basal1, std::vector< int > basal2)

double	pntToPnt::getRadiusFromRings (molSys::PointCloud< molSys::Point< double >, double > *yCloud, std::vector< int > basal1, std::vector< int > basal2)

double	pntToPnt::getAvgHeightPrismBlock (molSys::PointCloud< molSys::Point< double >, double > *yCloud, std::vector< int > basal1, std::vector< int > basal2)

int	pntToPnt::relOrderPrismBlock (molSys::PointCloud< molSys::Point< double >, double > yCloud, std::vector< int > basal1, std::vector< int > basal2, std::vector< std::vector< int >> nList, std::vector< int > outBasal1, std::vector< int > *outBasal2)

int	pntToPnt::relOrderPrismBlock (molSys::PointCloud< molSys::Point< double >, double > yCloud, std::vector< int > basal1, std::vector< int > basal2, std::vector< int > outBasal1, std::vector< int > *outBasal2)

Eigen::MatrixXd	pntToPnt::fillPointSetPrismRing (molSys::PointCloud< molSys::Point< double >, double > *yCloud, std::vector< int > basalRing, int startingIndex)

Eigen::MatrixXd	pntToPnt::fillPointSetPrismBlock (molSys::PointCloud< molSys::Point< double >, double > *yCloud, std::vector< int > basal1, std::vector< int > basal2, int startingIndex)

Eigen::MatrixXd	pntToPnt::getPointSetCage (ring::strucType type)

int	pntToPnt::relOrderHC (molSys::PointCloud< molSys::Point< double >, double > yCloud, std::vector< int > basal1, std::vector< int > basal2, std::vector< std::vector< int >> nList, std::vector< int > matchedBasal1, std::vector< int > *matchedBasal2)
	Matches the order of the basal rings of an HC or a potential HC. More...

std::vector< int >	pntToPnt::relOrderDDC (int index, std::vector< std::vector< int >> rings, std::vector< cage::Cage > cageList)
	Matches the order of the basal rings of an DDC or a potential HC. More...

Eigen::MatrixXd	pntToPnt::changeHexCageOrder (molSys::PointCloud< molSys::Point< double >, double > *yCloud, std::vector< int > basal1, std::vector< int > basal2, int startingIndex=0)

Eigen::MatrixXd	pntToPnt::changeDiaCageOrder (molSys::PointCloud< molSys::Point< double >, double > *yCloud, std::vector< int > ddcOrder, int startingIndex=0)

Namespaces

Functions