GlossaryΒΆ

term

meaning

libyodaLib

C++ engine library in this repository

seams

Argum CLI in this repository

yoda

Compiled Python module in PydSEAMSlib (_core / cyoda aliases)

dseams

Lua table from require("dseams") in yodaStruct

CHILL+

Four-neighbour staggered/eclipsed star classifier

CHILL

Original four-neighbour rule (seams chill)

HC

Hexagonal cage (ice Ih, 12 waters)

DDC

Double-diamond cage (ice Ic, 14 waters)

ice score

Per-atom HC / DDC membership (seams cages)

seeded

Mutual four-nearest seeds, union completions

ringAdjacentCompletion

All-but-one fill of a labelled six-ring; fifth argument of seededCageAffiliation, default false; CLI --complete

walk_compare

Meson binary in tests/: per-frame CHILL+ and cage counts with cluster sizes

nop

Number of particles in the analysed cloud

TUM

Topological unit matching

PointCloud

Positions, types, box, and per-atom labels

vesin

Optional cutoff cell list (neighList / neighListO); brute force if not built

linkcell

Optional periodic k-NN (nominateByLinkcell); knn / seeded graphs and device TUM, not a drop-in for vesin