topo_two_dim.hpp
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4 // the Free Software Foundation, either version 3 of the License, or
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10 
11 #ifndef __TOPO_TWO_DIM_H_
12 #define __TOPO_TWO_DIM_H_
13 
14 #include <algorithm>
15 #include <array>
16 #include <fstream>
17 #include <iostream>
18 #include <iterator>
19 #include <math.h>
20 #include <memory>
21 #include <sstream>
22 #include <string>
23 #include <sys/stat.h>
24 #include <vector>
25 
26 #include <mol_sys.hpp>
27 #include <order_parameter.hpp>
28 #include <ring.hpp>
29 #include <seams_input.hpp>
30 #include <seams_output.hpp>
31 
42 namespace ring {
43 
49  molSys::PointCloud<molSys::Point<double>, double> *yCloud, int maxDepth,
50  double sheetArea, int firstFrame);
51 
55  std::vector<int> *atomTypes, std::vector<int> nRings);
56 
57 } // namespace ring
58 
59 #endif // __TOPOCONFINED_H_
int polygonRingAnalysis(std::string path, std::vector< std::vector< int >> rings, std::vector< std::vector< int >> nList, molSys::PointCloud< molSys::Point< double >, double > *yCloud, int maxDepth, double sheetArea, int firstFrame)
int assignPolygonType(std::vector< std::vector< int >> rings, std::vector< int > *atomTypes, std::vector< int > nRings)
The main molecular system handler.
Topological network criteria functions.
Definition: ring.hpp:60
File containing common functions used by bulk and confined topological network critera.
File for functions that read in files).
This contains a collection of points; contains information for a particular frame.
Definition: mol_sys.hpp:166
This contains per-particle information.
Definition: mol_sys.hpp:145